Doron Lipson*, Tal Raz*，Quantification of the Yeast Transcriptome by Single Molecule Sequencing，Nature Biotechnology: doi:10.1038/nbt.1551
Fatih Ozsolak, David T Ting, Amplification-free digital gene expression profiling from minute cell quantities, Nat Methods. 2010 August ; 7(8): 619–621
Fatih Ozsolak, Alon Goren, Digital transcriptome profiling from attomole-level RNA samples, Genome Research January 29, 2010:519-525
Philipp Kapranov1, Fatih Ozsolak, Novel class of human RNAs associated with gene termini suggests an uncharacterized RNA copying mechanism, Nature. 2010 July 29; 466(7306): 642–646.
Philipp K., Georges S., The majority of total nuclear-encoded non-ribosomal RNA in a human cell is ‘dark matter’ un-annotated RNA, BMC Biology 2010, 8:149
Lee T. , Doron L. , A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes, PLoS ONE, March 2011,Volume 6,Issue 3
David T. , Doron L , Aberrant Overexpression of Satellite Repeats in Pancreatic and Other Epithelial Cancers, Science. 2011 February 4; 331(6017): 593–596.
Tal Raz, Philipp Kapranov, Protocol Dependence of Sequencing-Based Gene Expression Measurements, PLoS ONE, May 2011 , Volume 6, Issue 5
Tal Raz, Marie Causey, RNA Sequencing and Quantitation Using the Helicos Genetic Analysis System, High-Throughput Next Generation Sequencing: Methods and Applications, Methods in Molecular Biology, vol. 733,
Anjali Mandlik, Jonathan Livny, RNA-seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression, Cell Host Microbe. 2011 August 18; 10(2): 165–174.
Fatih Ozsolak and Patrice M., Single-molecule direct RNA sequencing without cDNA synthesis, Wiley Interdiscip Rev RNA. 2011 ; 2(4): 565–570.
Fatih Ozsolak and Patrice M. Milos, Transcriptome Profiling Using Single-Molecule Direct RNA Sequencing, High-Throughput Next Generation Sequencing: Methods and Applications, Methods in Molecular Biology, vol. 733
Unamplified cap analysis of gene expression on a single-molecule sequencer, Mutsumi Kanamori-Katayama,1 Masayoshi Itoh, Genome Research, 2011,21:1150–1159
Alexander S., Céline Duc, Direct Sequencing of Arabidopsis thaliana RNA Reveals Patterns of Cleavage and Polyadenylation, Nat Struct Mol Biol. 2012 August ; 19(8): 845–852.
Georges S., Dmitry S., Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells, BMC Genomics 2012, 13:504
Philipp Kapranov , Fatih Ozsolak, Profi ling of Short RNAs Using Helicos Single-Molecule Sequencing, Next-Generation MicroRNA Expression Profi ling Technology: Methods and Protocols, Methods in Molecular Biology, vol. 822
Marco Magistri, Mohammad Ali ,Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts, Trends in Genetics August 2012, Vol. 28, No. 8
Min Yu, David T. , RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis, Nature, Research Letter,2012
Yongjun Chu and David R., RNA Sequencing: Platform Selection, Experimental Design, and Data Interpretation, NUCLEIC ACID THERAPEUTICS , Volume 22, Number 4, 2012
Georges St., Michael R., Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila, nature structural & molecular biology, VOLUME 20, NUMBER 11, NOVEMBER 2013